Understanding of the principal drivers of pest and disease incidence, severity, and spread in Scotland, and the factors currently limiting effective disease control
Challenges
Plants sustain life, mitigate climate change, enrich landscapes, and underpin our rural industries. However, they are subject to an ever-increasing range of pest and disease threats. The drivers of these threats are travel, the globalisation of trade, and the effects of climate change.
It is vital to protect the health and quality of Scotland’s major crops (barley, potatoes, and soft fruit) from the wide range of endemic diseases. We need to reduce our dependency on crop protection chemicals due to pesticide resistance and concerns around impacts on biodiversity. We must therefore develop innovative and effective non-chemical controls that support sustainable ecosystem management and agricultural reform.
Phytophthora species (cause of the disease Potato late blight) infect plant species across agriculture, horticulture, forestry, and the natural environment. Blight infections are difficult to manage, making them one of Scotland’s key plant health threats. Potato Cyst Nematode (PCN) causes significant yield losses, and the amount of infested agricultural land increases every year. If the current loss of land continues, our £100 million seed potato industry will be in jeopardy in the next 30 years.
Scotland’s soft fruit industry supports the rural economy. There is also a need to future-proof the sector in the face of many plant disease challenges. There are considerable threats to the sector posed by Spotted Winged Drosophila (SWD), Brown Marmorated Stink Bug, and Phytophthora root rot, to name a few. It has never been more important that we better understand, detect, and manage these pests and diseases to support the sector in producing high-quality, healthy, and marketable crops.
Questions
- What are the short- and medium-term measures that need to be undertaken to control Potato Cyst Nematode in Scotland to support the sustainability of Scotland’s potato and bulb industries?
- What is the epidemiology of key pest and pathogen interactions and how can we improve our biosecurity for key Scottish crops (cereals, potatoes, soft fruits)?
- How can we best protect the sustainability of Scotland’s valuable soft fruit industry from pests and diseases?
Solutions
Our comprehensive project is quantifying the abundance, diversity, and spatiotemporal dynamics of key Scottish crop pests and pathogens. We are also exploring the ecology of pest and pathogen-host-environment-management interactions and the potential impacts of climate change. Discussions with growers and stakeholder groups identified the need for new knowledge on the underlying causes of key pests and disease spread in key environments and new predictive tools for scenario analyses and decision-making.
Analysing Restrospectively Outbreaks of Endemic Potato Diseases
National-scale datasets on outbreaks of endemic potato diseases have been collected over many years. Despite this, there are gaps in our understanding of the epidemiology of these diseases. We are conducting an exhaustive analysis of this data together with existing national-scale datasets on other risk factors.
Exploring the Epidemiology and Management of Potato late blight
Routine fungicide applications remain the principal means of managing Blight. However, product withdrawals and pressures to minimise environmental impacts continue to shift the focus onto enhancing host plant resistance. We are monitoring changes in the population of P. infestans to:
- Examine the sensitivity of the contemporary population to changing environmental conditions
- Track the virulence of the new populations against key resistance genes
- Monitor the sensitivity to commonly used active ingredients
Tracking Pectobacterium Strains in the Environment
Previous work has shown that Pectobacterium atrosepticum (Potato Blackleg) resides on the roots of non-potato plants and that even first-generation plants grown from mini tubers can develop the disease. This suggests an environmental rather than seed-borne source of the pathogen. We are exploring different plant types and habitats where blackleg disease is found to determine whether some are more likely to harbour the pathogen, and to what extent these isolates are responsible for causing disease.
Assessing the Impact of Local and Landscape Factors on Spotted Wing Drosophila (SWD) Epidemiology
SWD is a priority pest threatening the survival of the UK soft and stone fruit industries. We are predicting which soft fruit areas may support a higher abundance of SWD and relating this to local and landscape-scale factors. This research is complemented by work on the role that differences in crop varieties have in relation to pest susceptibility and habitat and landscape factors regarding the stability of populations.
Monitoring Potato Cyst Nematode (PCN) Decline Rates under Scottish Conditions
We are monitoring and comparing the decline of PCN in different soil types and under current and projected overwintering conditions. This is examining the impact of soil amendments on decline rates, providing information on the mode of action of these practices.
Developing Decision Support Tools for Barley Diseases
This activity is developing predictive algorithms that can identify crops where fungicide interventions can be reduced, and exploring long-term data sets on disease development in barley for Ramularia leaf spot and Rhynchosporium. This is determining how drought, water logging, wetter winters, and growing conditions at tillering and stem extension affect disease risk and link to the risk associated with other altered management practices, such as cover cropping, tillage, and soil management in general.
Project Partners
Progress
The first objective is to improve our understanding of the epidemiology of potato viruses in Scotland. Data from more than 50,000 crops was analysed using ArcGIS, revealing striking geographic differences in long-term disease outcomes. A machine learning model was developed to predict incidence and serve as the basis of a decision support tool. The model was interpreted to reveal that variables related to seed stock origins were the most important divers of incidence, followed by production practices, and surrounding potato crops. A paper has been submitted to the journal of Plant Pathology.
The second objective is to characterise traits of Phytophthora infestans that causes the disease potato late blight. Representative isolates from the genotyped isolate collection were tested for virulence and sensitivity to fungicide active ingredients. Population data from British potato and other weed hosts was collated/uploaded to the EuroBlight database. Two new lineages (EU_43_A1/EU_41_A2) from Denmark have spread to The Netherlands and Belgium and are now a serious concern to GB growers. The threat is being examined with European partners and reported to the UK industry via presentations/press articles to shape late blight integrated pest management for the forthcoming season.
The third objective is to track Pectobacterium strains in the environment and in order to do this difference between Pectobacterium atrosepticum (Pba) isolates recovered from potato/non-potato environments need to be identified. Roots/rhizospheres of non-potato plants from field/other habitats were sampled and isolates selected from our culture collection. DNA was extracted and sent for whole genome sequencing. A confocal study of Pba colonisation of potato/radish/oat roots revealed that Pba could not colonise oats as efficiently as the other species. This provides vital information on plant species that are a risk for harbouring the bacterium.
The fourth objective is to assess different factors on SWD epidemiology. Monitoring of Drosophila suzukii (SWD) at three farm sites in Scotland revealed that abundance has increased in recent years. Previous data detected only sporadic low numbers, but in 2022 we detected higher abundances consistently from September to November. Farmers/relevant stakeholders have been made aware of these findings, which highlight the importance of tracking abundance and understanding the driving factors to identify control measures. To support this, we generated novel information about fruit varietal susceptibility to SWD for raspberry/blackberry crops.
The fifth objective is to monitor PCN decline rates under Scottish conditions; to do so long-term experiments had to be set up under different climate conditions and different soil management conditions. This has been completed. These experiments have been set up in a way that will allow repeated sampling and analysis of the survival of the nematodes under the various conditions.
The final objective is to develop decision support tools for Barley diseases. We have therefore started by collating data from barley trails across Scotland/UK. These will be analysed to determine the factors that exert the biggest influence on development of Rhynchosporium leaf scald and Ramularia leaf spot. Both attack barley crops reducing yield and quality. The Rhynchosporium analysis will quantify the scope for reducing chemical inputs via host resistance. Ramularia control relies on using chemicals before symptoms appear and our analysis is aimed at providing growers with an indication of their disease risk to allow tailored inputs for control.
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