Rapid and specific tests for the identification of protozoan parasites in Scottish drinking water

Water
2022-2027
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Project Lead

Challenges

Water utility companies have a legal regulatory requirement to test their drinking water for the presence of Cryptosporidium oocysts and only test their water supply for the presence of Giardia cysts when there is a potential outbreak or contamination. Cryptosporidiosis and Giardiasis are the most diagnosed parasitic diseases in humans in Scotland and drinking water has been implicated in their transmission. However, they do not test for Toxoplasma oocysts within their water supply. Previous research has detected Toxoplasma gondii DNA in some Scottish public water supplies. Humans can become infected with Toxoplasma by ingesting oocysts in water contaminated with infected cat faeces. Unlike Cryptosporidium and Giardia, Toxoplasma was not previously considered to be a significant waterborne pathogen; however, following the occurrence of large human outbreaks, linked to Toxoplasma oocyst contamination of water supplies, it has emerged as an important transmission route.

The screening protocols used by the water utility companies are:

  • Labour intensive
  • Time-consuming
  • Involve microscopy, which requires high levels of expertise
  • Prone to operator error due to subjectivity of oocyst identification during microscopy, especially in dirty water samples
  • Time-limited as microscopy operators are limited by a maximum of 4 hrs per day due to Health and Safety guidance
  • There are currently no commercial and validated tests for the detection of Toxoplasma oocysts in water samples
  • Microscopy cannot distinguish between human infectious/non-infectious species/assemblages of parasite
  • Standard fluorescent microscopy cannot distinguish between live and dead parasite oocysts/cysts

Questions

How do we continue to improve drinking water quality?

Solutions

This project aims to develop new methods that can be used by the water industry and its regulators to remove/limit these constraints.

 

Developing rapid and specific diagnostics for the detection and genotyping of Cryptosporidium species and Giardia assemblages in drinking water

Current Cryptosporidium and Giardia detection methodologies in raw/drinking water used by water utility companies rely on the detection of oocysts/cysts microscopically, which is very subjective, labour-intensive and time-consuming. Identification of oocysts by microscopy requires high levels of expertise but operators can only work microscopically for 4 hours per day for health and safety reasons. An additional drawback is that oocyst/cyst identification is only to the genus level, while there are many Cryptosporidium and Giardia species and assemblages that are not infectious to humans.

We are developing and validating quantitative DNA detection methods (qPCR technologies) for the detection and enumeration of Cryptosporidium oocysts or Giardia cysts that could replace the need for microscopy. These are “catch-all” qPCRs that detect and enumerate all Cryptosporidium and Giardia species and provide equivalent results to microscopy but will be less labour-intensive and allow for multiple samples to be processed at the same time. This technology can distinguish between human-infectious and non-infectious Cryptosporidium and Giardia species/genotypes, which would give a direct indication of risk to human health faster than the current approach. A further advantage of the qPCRs is that they only amplify DNA from oocysts that have not been inactivated (killed) by UV, as UV treatment will degrade the parasite’s DNA. Therefore, the qPCRs could also provide evidence when UV treatment has failed, which cannot be achieved by microscopy. The proposed qPCRs not only provide time savings, but they will also provide additional information on human infectivity and viability of parasites compared to the current methodologies currently used.

 

Developing a technique to extract Toxoplasma gondii oocysts from drinking water

Detection methods for Toxoplasma in water are underdeveloped compared to other protozoan parasites and rely on a combination of molecular assays, microscopy, and bioassays. Currently, Scottish Water tests all its water supplies for Cryptosporidium spp. but there is no requirement to test for Toxoplasma. Previous work demonstrated that 9% of water samples (including finished water) from different public water supply plants in Scotland were positive for Toxoplasma DNA, highlighting the potential importance of this transmission route.

In a follow-up study, one Toxoplasma oocyst was detected by microscopy in a final water sample; however, this was likely an underestimate of positive samples due to the difficulty in detecting oocysts in turbid water samples. The Drinking Water Quality Regulator have highlighted their requirement for a specific and sensitive technique for detecting Toxoplasma in water samples. Therefore, we aim to develop an immunomagnetic separation (IMS) technique using a suitable monoclonal antibody specific to the outer wall of Toxoplasma oocysts. Initially, a panel of antibodies is being tested for their ability and efficiency to capture Toxoplasma oocysts and their ability to dissociate from the antibody/capture bead complex so that samples can be used for downstream microscopy or DNA extraction (qPCR, genotyping and assessing viability). Secondly, the IMS is being tested using spiked water samples ranging in turbidity to assess oocyst recovery rates and thus the suitability of the technique for detecting oocysts in drinking water as well as catchments. The development of a sensitive and specific technique for detecting Toxoplasma oocysts in water allows water industries, not only in Scotland but worldwide, to assess the risk of toxoplasmosis from water.

 

Developing digital image analysis methods for the detection and quantitation of protozoal oocysts/cysts

Currently, water utility companies use fluorescent microscopy to detect Cryptosporidium oocysts and Giardia cysts in raw and drinking water. This methodology is subjective, labour-intensive and time-consuming. In addition, the identification of oocysts by microscopy requires high levels of expertise but operators can only work for 4 hours per day due to health and safety guidance. Image processing algorithms have been developed that can automatically identify and quantify eggs from parasitic worms affecting humans in wastewater samples. We are using a similar approach to develop an algorithm that can identify oocysts/cysts from Cryptosporidium, Toxoplasma and Giardia in water samples. If successful, this automated image analysis algorithm has the potential to reduce the time required for the identification of parasite oocysts/cysts. In addition, the number of oocysts/cysts can be accurately counted, which would allow the infectious load to be accurately estimated. This algorithm for automated detection and quantitation of protozoal oocysts can inform the assessment of the risk of protozoan parasites within catchments and drinking water for the water industry and regulators.

Progress

2023 / 2024

Year 2 progress:

  • DNA detection methods: Variable regions of the Cryptosporidium and Giardia genomes have been identified as excellent targets for developing sensitive DNA-based assays. Sequence data has been generated and will be used to design new detection tests in Year 3.

  • Extracting Toxoplasma eggs: Work is underway to create a magnetic separation technique that can isolate Toxoplasma eggs from water samples. Optimisation trials revealed challenges with antibody performance, but a new antibody has been sourced from collaborators and will be tested next.

  • Digital image analysis: Digital microscopy tools are being developed to automatically screen water samples for parasite eggs. Positive and negative slides have been successfully scanned using two different slide scanners, with a third test planned. This will allow the team to select the best system for producing high-quality images quickly and efficiently.

Engagement:
Stakeholder meetings with Scottish Water and the Drinking Water Quality Regulator (DWQR) have ensured the research stays closely aligned with industry needs.

All deliverables and milestones were achieved on time, and the project remains on track.

2022 / 2023

The project is developing new tools to help water providers, including Scottish Water, detect harmful parasites more quickly and effectively in drinking water. Current testing methods are slow, costly, and limited – focusing mainly on Cryptosporidium and occasionally Giardia. However, research has already shown that Toxoplasma can also be present in Scottish water supplies, and there is currently no method available for water companies to test for it. This project is addressing these gaps.

Year 1 progress:

  • Faster parasite detection: Work is underway to develop a sensitive, specific, and fast DNA-based test (qPCR) for Cryptosporidium and Giardia. Promising genetic targets have been identified, and a reference bank of parasite DNA has been created to support test development.

  • Detecting Toxoplasma in water: Efforts have started to create a new immunomagnetic separation (IMS) technique – similar to the one already used for Cryptosporidium. Early trials have highlighted challenges, but the method is being refined with international collaborators.

  • Digital screening: A new image analysis system is being designed to automatically detect parasite cysts and oocysts in water samples, reducing the need for manual microscopy and speeding up results. Algorithms have been identified, and image capture methods are being optimised.

Engagement:
The team has met regularly with Scottish Water, the Drinking Water Quality Regulator (DWQR), and scientific collaborators to share progress and gather feedback.

All project milestones and knowledge exchange activities were delivered on time, keeping the research firmly on track.

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